On-demand workflow design for image processing and analysis
Research organism: Freshwater invertebrate
STED correlative imaging with molecular dynamic and interaction (FCS-FLIM-FRAP-FRET) on thin, thick samples
Light-sheet imaging of fixed and live samples. We can afford (cells, IPS, organoïds, hydra, fish, human tissues) because the microscope is installed in Biology Safety Level 2
Low signal fast live imaging at nano-scale level (Airy / Fast Airyscan , Live-3D-STED, Live-3D-SLMN)
Cell-biology expertise: providing cells(epithelial, glial, neuronal) and organoïds, labelling (transfections or probe-Test), and imaging for physicist, chemist that would like to test a prototype. Including : Guidance on super-resolution modalities (collaboration) : from system choice (SIM-STED-STORM) to images processing and data analysis (tools development).
With the help of the IBDM Lignt Microscopy Facility we can offer an comprehensive CLEM Pipeline from live fluorescence imaging to EM imaging (in 2D and 3D)
As Volume EM techniques we offer Electron Tomography and Serial Blockface Scanning Electron Microscopy. The targeting of a precise ROI can be achieved by integrating Light Microscopy or X-ray imaging in the pipeline.
On-demand workflow design for image processing and analysis
(Key-words: Python, Java, ImageJ, Fiji, plugin, macro, notebook, deep-learning)
Our platform offers a dedicated service of bioimage analysis and provide access to powerful workstations, a storage server and a high performance computing cluster with OnDemand. We deploy and maintain for you multiple analysis platforms (Fiji, Napari, QuPath, Imaris, … ), but we can also deploy new tools required for your analysis. With these ressources we can tailor pipelines using state of the art deep-learning solutions to extract quantifiable metrics such as detections, tracks and segmentations from your images.