Image Data Handling

The team investigates morphogenetic processes in morphogenesis in Metazoans. We focus on the integration of cellular, molecular and genetic processes based on long-term 3D+time imaging of developing organisms in normal and perturbed conditions, data reconstruction and quantitative analysis. Methodological developments include: assisted microscopy based on machine learning strategies to optimize live imaging conditions by multiphoton point laser scanning microscopy and light-sheet microscopy, automated image processing and quantitative data analysis, interactive visualisation for cell lineage data validation, correction and analysis.

Expertise of the Team:

• Machine learning for assisted microscopy and image processing
• Optimization for in vivo and in toto 3D+time imaging by multiphoton point laser scanning microscopy and light sheet microscopy of developing organisms (metazoans an plants)
• Data management, image processing workflow, interactive visualisation