Euro-BioImaging On March 9th 2016 was held in Rehovot the kick-off meeting of the INFRADEV preparatory phase II (PPII) European project that aims at bringing EuroBioImaging to a functional European infrastructure (ESFRI) under the status of an ERIC. In that project, France (through FBI) is coordinating the WP7 « Training » that aims at preparing the organization and procedures of training activities, identification of training sites and portfolio of training courses and e-learning, for both users and core facility staff.
France presented the WP7 objectives, working plan, activities already under process: the creation of specific working groups on community surveys, interaction with industry and e-learning.
The next steps is to draft the surveys to analyse the needs and resources for training, and the organization of meetings of heads of EuroBioImaging node candidates as well as core facility staff to gather feedback on training organization.

This project runs for two years with a 1.5 M€ funding and will develop close ties with other projects in which EuroBioImaging is involved such as the Global BioImaging project or linked to, such as the “Neubias” COST action.
Through these projects, France continues to reinforce its position in EuroBioImaging by the demonstration of its capacity to organise, structure and provide training activities.

Dear Colleagues,

The 6th Biosensor Meeting will take place on May 12th-13th 2016 at the campus of Orsay (Batiment des Colloques).

The GDR MIV Biosensor Group promotes the development and implementation of real time biosensor imaging approaches to decipher the spatio-temporal dynamics and underlying regulatory mechanisms of signaling cascades, kinase activities, protein-protein interactions and more: from single cells to complex biological systems including tissues, whole embryos and adult animals. This meeting gathers biologists, chemists and physicists developing fluorescent probes, reporters or biosensors whether genetically-encoded or synthetic, allowing for exchange of ideas and tools over two days. The format will be similar to the previous editions and will provide an opportunity to young researchers and confirmed scientists to share their work in the form of oral communications or posters.

The 6th edition will include a special focus on mechanical and chemical sensors.
Confirmed invited speakers are Carsten Grashoff (MPI Biochemistry, Munich, Germany) and Ranieri Bizzarri (Nanoscience Institute, Pisa, Italy)

Information and registration information at the web site :
http://www.cpps.u-psud.fr/?page_id=1281

We receive your suggestions of titles for communications together with a short (half page) abstract at biosensor-meeting@services.cnrs.fr

Download Poster

Accomodation : we have reserved rooms at Residhome Bures-La Guyonnerie,
within walking distance of the meeting site (mention BIOSENSOR as key
word of your mail) : bures.guyonnerie@residhome.com Document BIOSENSOR

Do not hesitate to forward the information to any colleagues who may be
interested.

We look forward to hearing from you,

The Organizing Committee: Olivier Gavet (Villejuif), Fabienne Mérola
(Orsay), May Morris (Montpellier), Clotilde Randriamampita (Paris), Eve
Ranvier (Orsay), Franck Riquet (Gand), Grégoire Vandecasteele
(Chatenay-Malabry), Pierre Vincent (Paris)

Affiche Mifobio2016 GB Dear all,

The second call for workshops in MiFoBio2016 is on!

To date, we have almost 80 workshops proposed, with 45 pre-selected. We thank all those who have brought these proposals. When selecting, a particular attention will be paid to the educational aspect, the innovative nature of the proposal, the close association of a biological problem addressed to the technological approach.

Pre-selected workshops will be validated once obtained the certainty that required material will be available during the school.
 

For this second call, we would like to reinforce certain themes, however not exclusively :

    • All type of home-made microscopy systems
    • optogenetics approaches
    • Imaging of scattering media, heterogeneous, outliers, …. (adaptive optics)
    • Application of biological models on small organisms (insects, fish, … but excluding mammals) for developmental biology
    • neuro-biological imaging
    • Photomanipulations
    • Bio-sensors
    • nonlinear imaging and non-conventional imaging (phase imaging, ….)
    • Microscopy with structured illumination
    • Contribution of microfluidics for microscopy
    • Modelling and simulation of molecular dynamics and cellular organization.

 

Procedure for proposing a workshop:

    1. Application to attend the thematic MiFoBio2016 school: go to the website of GDR-MIV: http://gdr-miv.fr/mifobio2016/ to get your identifiers.
    2. Then submit your workshop proposal via the dedicated website: http://ateliers-mifobio.fr
    3. Login using your GDR-MIV identifiers.
    4. Go in the “Workshops / Submit a new workshop” and fill in all the form fields.

In the “abstract” (1000 characters max.) Thank you to define the objective(s) of the workshop you propose. A “description” field (10000 characters) is available for a more detailed explanation. This will be used for evaluation.

The whole site is in English. Your proposals must be registered on the website before 23 April.

 

What changes from previous editions:

    • You can create and edit your workshop proposals online.
    • Workshops can have only two trainers/animators. For this purpose a specific mechanism has been put in place:

      o The main animator creates the workshop file.
      o Then goes in the “Workshops / List my workshops” section.
      o In the “Code for co-animator” he “copy / paste” the code and sends it by mail to his co-animator.
      o The co-animator connects to the site (after having pre-registred to MiFoBio). Then he goes in the “Workshops / List my workshops” section and in “Enter a co-animator code”

The workshops can be repeated two or more times during the school (the number of repetition is likely to be modulated up or down).

The workshops will be selected by the organizing committee.

The workshop team is at your disposal for any further information and can be reached at the following address
mifobio-co-atelier@services.cnrs.fr

 
The workshop team: Fabrice Cordelières, Sandrine Lecart , Christine Terryn.

The Executive Board of France-BioImaging has decided to support the following projects:
 

AAP Access
  • Effect of vitamin A on splenic dendritic cells subset localization: by Jennifer Gommerman of the University of Toronto for 3 months in Paris-Centre (PICT).
  • Topology of integrin LFA-1 activation during human T lymphocyte motility with super-resolution microscopy: by Raissa Houmadi of the Imaging cellular facility (Toulouse) for 4 days in Paris-Centre (IJM).

May 24, 2016 May 27, 2016
Barcelona

Download the programme here
Website and Registration

The International symposium in BioNanoVision will bring together a multidisciplinary group of world-leading scientists to further our understanding on the fundamental molecular mechanisms that regulate cellular architecture, from nuclear organization to the cell membrane. These will include experts from the optical nanoscopy field, biophysicists, cell biologists, chemists and statistical physicists. Since super-resolution and single molecule optical techniques have been crucial to advancing our understanding of cellular structure and protein behaviour, we will place a special emphasis on the technologies that are enabling the visualization of molecular components at function with unprecedented spatiotemporal resolution.

We would like to invite you to take part in this exciting meeting, which will take place during 25-27 May 2016 in Barcelona, Catalonia, Spain, at ICFO – the Institute of Photonic Sciences.

July 4, 2016 July 6, 2016
Marseille

Download the programme here
Website and Registration

The aim of the course is to acquire, by alternating courses, exercises and practical conditions, methods and constraints to the development of a provision of scientific equipment service. We insist on how to develop a contributory model for managing a scientific platform.
Main subjects we deal :
. Know how to read and write a technical specification within the framework of a tender
• Law, regulations of the tendering, billing service
• Relationship to the environment, mounting a local competence network, human relations at work, motivation in a group.
• Establish and improve its working organization with IT tools (Mind Mapping, Gantt Chart)
• Target the instrument you need and manage its obsolescence
• Evaluate the performance of the instrument and make it visible.
• Implementation of indicators (downstream and upstream) to well manage a platform and to give wide overview of its operating.

 

 

It will be held in Roscoff (Brittany), France, June 13-17, 2016.

Chairperson: Christophe MULLE, christophe.mulle@u-bordeaux.fr
Vice-chairperson: Fritjof HELMCHEN, helmchen@hifo.uzh.ch

You will find all information at http://www.cnrs.fr/insb/cjm/2016/Mulle_e.html

Dear All,

The deadline for application to the Jacques Monod Conference on “Optical imaging of brain connectivity: from synapses to networks in action” is extended to March 14, 2016.

Don’t hesitate to send an abstract, there are still some possibilities to attend. Note that up to 6 participants will be selected for a short talk, based on their abstracts.

Best regards,
Christophe Mulle
Fritjof Helmchen

Invited speakers
Laure BAILLY-CUIF (Gif sur Yvette, France) Imaging neural progenitor cells dynamics during behavior
Haruhiko BITO (Tokyo, Japan) Labeling, monitoring and manipulating active ensembles
Alain CHEDOTAL (Paris, France) Development of new imaging methods to study the organization of sensory systems
Daniel CHOQUET (Bordeaux, France) Nanoscopic organization of synapses
Rosa COSSART (Marseille, France) Imaging ripple events in the awake mouse hippocampus
Valentina EMILIANI (Paris, France) Two-photon optogenetics by spatio-temporal shaping of ultrafast pulse
Andreas FRICK (Bordeaux, France) Neuronal circuits probed with recombinant rabies virus technology
Viviana GRADINARU (Pasadena, USA) Brain control with light; development and application to mental disorders
Fritjof HELMCHEN (Zürich, Switzerland) Imaging cortical circuit dynamics in behaving mice
Sonja HOFER (Bazel, Switzerland) Imaging function and structure of the visual system
Anthony HOLTMAAT (Geneva, Switzerland) Neural circuits in the mammalian neocortex
Ehud Y. ISACOFF (Berkeley, USA) Design of novel probes for the optical detection and manipulation of neuronal signaling
Jinny KIM (Seoul, South Corea) mGRASP for mapping connectivity at multiple scales
Arthur KONNERTH (Tum, Germany) Impaired neuronal network function in mouse models of Alzheimer’s disease
Troy MARGRIE (London, United Kingdom) Sensory processing in single cells, circuits and behavior
Hannah MONYER (Heidelberg, Germany) Connectivity in the entorhinal cortex
Valentin NÄGERL (Bordeaux, France) Super-resolution imaging of spine plasticity
Elly NEVIDI (Cambridge, USA) Visualization of synapse assembly and disassembly in vivo: multispectral tracking of distinct circuit elements
Thomas OERTNER (London, United Kingdom) Controlling the strength and lifetime of synapses with light
Julie PERROY (Montpellier, France) Imaging plasticity at synapses
Dmitri RUSAKOV (London,United Kingdom) Mapping nanomolar calcium landscapes inside neurons and astroglia with FLIM
Angus SILVER (London, United Kingdom) Investigating the role of temporal coding using high speed 3D 2-photon imaging
Mark SCHNITZER (Stanford, USA)Development of fiber-optic fluorescence microendoscopy for studies of learning and memory
Scott STERNSON (Ashburn, USA) Neural processes that underlie hunger studied with reverse engineering of neural circuits
Katrin WILLIG (Göttingen, Germany) In vivo STED microscopy of the living mouse brain
Claire WYART (Paris, France) Investigation of a novel sensory interface relaying information from the cerebrospinal fluid to motor circuits
Hongkui ZENG (Seattle, USA) Large scale analysis of mouse brain connectivity

16-24 June, 2016
Saint-Jacut de la Mer
Brittany, France


Programme
Website

The spirit of this Summer School is inspired by the most prestigious school ever founded in France, Saint Flour, the influence of which has spread to generations of researchers in Mathematics. Since its establishment in Brittany in 1994, this school has become a worldwide reference. It is resolutely international (participants from more than twenty countries have participated to the previous editions) and accessible to young scientists. It is an open yet privileged place for exchanges and discussions of major on-going work. Informal and warm, at a location where the sea and the land combine in a time varying relation, this school brings together, every two years for ten days, the world great teachers and researchers in Biomedical Imaging.
Lectures, seminars, and discussions are organized at the highest level, but with the freedom of spirit that is the tradition of Brittany. The school objective is to contribute without any exclusion to advances in a rapidly evolving field, and to foster participation in the adventure of research. It provides up-to-date, state-of-art knowledge on emerging areas and addresses important issues dealing with complex, multivariate systems, going from basic to applied research.

24-27 May, 2016
Debrecen, Hungary

Download the programme here
Website and Registration

The annual Meeting of ELMI is an internationally recognized meeting on Light Microscopy combining lectures and hands-on industry workshops on cutting edge microscopy techniques and innovative applications in life sciences. In 2016 it will take place in Debrecen, Hungary, from the 24th to the 27th of May. In addition to plenary scientific lectures, ELMI 2016 offers a fantastic opportunity for users to enjoy the hands-on workshops in the latest developing instrumentation, and the chance to gain insight into the next generation of technologies. It also provides an excellent opportunity for networking with the industry and other devoted microscopists.

Auditorium of the François Jacob building
Institut Pasteur, 28 rue du Dr Roux, 75015 Paris, France
Tuesday March 8, 2016
Nota Bene
 
Registration (by e-mail):
chantal.martinez@pasteur.fr
Free of charge but mandatory

More information

The Education Department of the Institut Pasteur will be running a symposium on the same topic on Tuesday March 8, 2016, with the “Principles and Applications of Fluorescence Microscopy” course directors : David DiGregorio, Gael Moneron and Jost Enninga. This event will include a series of seminars to explore the latest technological developments in fluorescence microscopy. The symposium, which will take place in the auditorium of the François Jacob building, represents a unique opportunity to hear from the leading experts in fluorescence microscopy about their latest research findings. It is open to all scientists on campus. The event is free but prior registration is required.

11th Spatial Statistics and Image Analysis in Biology Workshop
Inria Rennes-Bretagne Atlantique centre, France
May 25-27, 2016

The SSIAB 2016 is part of a cycle of Danish-French conference, initiated in 1996 and held every two years alternately in Denmark and France. This 11th edition will take place in May 25-27 2016 in Rennes (Bretagne) at the French Institute for Research in Computer Science and Automation (Inria) Centre. It is jointly organized by the Serpico team of Inria, the Mathematics research institute IRMAR of the University of Rennes 1 and the Inra Institute of Genetics, Environment and Plant Protection (IGEPP).

This workshop is devoted to spatial statistics and image analysis and their applications in biology (e.g. agriculture, epidemiology, ecology, health and environment). It aims to bring together a limited number of participants (40 max.) interested in spatial statistics in general and specifically applied to biological problems. Each participant makes a presentation. Most participants come regularly to these meetings but new speakers (not necessarily French or Danish) are invited to each edition. Part of the presentations is reserved for ending PhD students and young researchers. This event is part of the thematic semester “Statistics” of the Centre Henri Lebesgue.

This international meeting on statistics applied to biological problematics will be the opportunity to meet international experts on the field to increase the visibility of this issue in the laboratory and in the community. The interventions of speakers and exchanges are likely to develop new partnerships and increase the involvement of IRMAR, INRA and INRIA colleagues on this topic.

Organization board: Bernard Delyon, Frédéric Lavancier, Charles Kervrann, Melen Leclerc

FLI, FBI and IBF 1st meeting,
on management and analysis of heterogeneous Big Data
Paris, January 22, 2016

Over the case studies presented by the three infrastructures, it appears that the life-science data deluge and in particular Image Data, causes processing and management issues in terms of volume, formats and numbers of parameters to integrate. However, the challenge to find ways to share and analyze the diversity of Biological Data will unquestionably lead, to scientific and medical advances previously impossible. Indeed, the trans-dimensional understanding of the living organisms that such a “Big Data” approach should bring, will allow a multi-scale view of biological mechanisms and provide new tools for the prevention and diagnosis of diseases.

Organization, integration, description and harmonization are essential for the best use, comparison and interoperability of the heterogeneous and large data sets produced by the different fields of Biomedical Sciences. It is therefore necessary to have standards in all stages of processing and validation in a context where most of the formats are not suitable for very large and/or complex data. For this purpose, it was decided to set up inter-INBS think tanks with the aim to develop common projects:

    (1) To explain the specific locks and identify means to solve them
    (2) To Illustrate on “study case” projects the added value of a joint work
    (3) To make recommendations for Big Data management in the Life Sciences Area

 

fli ifb Bille FBI