Skip to content
.
  • About
  • Nodes
  • Services
  • News
  • Applications
  • Training
  • Jobs
  • Contact us
Login
Register
Close

Training

Submit new training
Order by
Date
  • Starting date
  • Deadline
  • Past Trainings
Filter training by
Duration
General Aim
  • Biological
  • Medical
  • Core Facility Staff Career
Specific topics covered
  • Optics
  • Microscopy
  • Biological skills (Sample preparation, probes…)
  • Animal handling
  • Image processing and data analysis
Target audience of the training
  • Msc students
  • PhD students
  • Post-docs
  • Early career scientists (less than 8 years from the date of the PhD/doctorate)
  • Core Facility Staff
  • Core Facility Head
  • Researchers
  • Medical Officers
Node
Global BioImaging-ZEISS webinar series in Light Microscopy – Introduction to Confocal Microscopy
General Aim
Biological
Duration
Deadline
Start Date
30/03/2021 3:00 pm
End Date

Global BioImaging-ZEISS webinar series in Light Microscopy – Introduction to Confocal Microscopy

This webinar series will focus on the overarching topic of light microscopy areas including latest advances in light microscopy ecosystem covering state-of-the-art technologies, efficient workflows, and sample preparation methods.

Imaging core facility staff including personnel of light and electron microscopy core facilities and biomedical imaging units are invited to attend the webinars. Principal investigators, post-doctoral researchers, and graduate/PhD student who utilize imaging and microscopy technologies are also invited to attend. Webinar series are free of charge and we invite everyone from around the globe to attend the webinars.

Introduction to Confocal Microscopy (Tuesday, 30th March at 15:00 CEST)

Confocal Microscopy is one of the central pillars of the imaging facility. This training will provide a basic overview of how a confocal microscope works and why this is beneficial for Life Science imaging.

◉
Node
Bretagne-Loire
General Aim
Biological
Duration
Full time
Deadline
Start Date
22/03/2021 12:00 am
End Date
25/03/2021 12:00 am

Histologie : de la préparation d’échantillons à la validation des marquages par analyse d’image

La formation portera sur les préparations des échantillons pour la microscopie (de la prise en charge de l'échantillon jusqu'à la coupe sur lame) et les méthodes de vérification de la qualité des échantillons préparés en vue de leur quantification par analyse d'image. Les caractéristiques de préparation de différents types d'échantillons seront présentées (tissus durs - os -, biopsie, organe entier...) et mises en pratique.
Cours et tables rondes (40 %)
- Préparation des coupes :
. détails des étapes de préparation des coupes histologiques paraffine et congelées
. présentation des diverses colorations, des protocoles, de cas d'écoles et d'erreurs typiques à éviter
- Immuno-marquages :
. préparations en immuno-histochimie sur coupe (DAB - Red chromogène...)
. éléments de traitement du signal et d'analyse d'image pour validation de la bonne préparation des échantillons
. aspects quantitatifs
. immunofluorescence - multiplexing
- Introduction à la préparation des gros échantillons : spécificités liées aux marquages et à la préparation des gros échantillons pour observation en microscopie
Travaux pratiques (60 %)
- Préparation des échantillons histologiques (mise en œuvre des protocoles présentés)
- Visualisation au microscope des échantillons préparés
- Acquisition et analyse des images dans les meilleures conditions (logiciels gratuits QuPath et ImageJ)
Possibilité de faire les TP, à des fins pédagogiques, sur des échantillons apportés par les stagiaires.

EQUIPEMENTS
Microtomes ; cryostat ; automate de coloration ; serial block face ; scanner de lame (fond et fluorescence) ; microscope champ large et confocal ; ordinateurs avec QuPath et ImageJ
Voir le site internet de la plateforme MicroPICell pour une description détaillée des équipements

◉ 8 Quai Moncousu, 44000 Nantes, France
Node
France BioImaging Light-Sheet Fluorescence Microscopy Remote Training
General Aim
Biological
Duration
Deadline
12/02/2021 12:00 am
Start Date
15/02/2021 12:00 am
End Date
05/03/2021 12:00 am

France BioImaging Light-Sheet Fluorescence Microscopy Remote Training

France BioImaging (FBI) is organizing a remote training on Light-Sheet Fluorescence Microscopy (LSFM), which enable 3D imaging of biological samples with unprecedented spatio-temporal resolutions and low perturbing effects.

LSFM methods actually cover a large variety of implementations which allow imaging a wide range of sample types, from single cell to whole organs or organisms both live and fixed. These new imaging capabilities are revolutionizing the way we visualize our samples and address biological questions. However, imaging with a light-sheet microscope raises many questions about the choice of the set-up depending on the sample to image, the sample preparation and mounting protocols or the data management (storage, visualization, quantification). Thus, it can be difficult to find its way through the numerous microscope implementations, protocols and tools that have been extensively developed over the last 20 years. We therefore decided to review all those questions in a remote training.

Our goal is to help people who want to jump into the world of 3D imaging and are seeking the best solution for their samples and biological questions. In that perspective, we will provide a comprehensive picture including all the possibilities and challenges regarding LSFM.

The training will be divided in 3 parts:

- Theoretical courses on LSFM
- Practical demonstrations of several LSFM implementations available throughout the FBI infrastructure
- Live online question and answer session

For the two first parts, videos will be available on a Youtube FBI channel. The participants will have 3 weeks, from the 15th of February to the 5th of March 2021, to watch those videos and will be invited to ask questions or comment.

FBI experts will then answer all questions during a live interactive video chat on the third week of the training (5th of March where participants will have the opportunity to directly interact with the experts.

◉
Node
Expansion Microscopy Webinar by Andor, An Oxford Instruments Company
General Aim
Biological
Duration
Deadline
Start Date
03/02/2021 12:00 am
End Date
03/02/2021 12:00 am

Expansion Microscopy Webinar by Andor, An Oxford Instruments Company

Expansion microscopy virtual workshop.

For the convenience of our global attendees, we will be conducting two sessions: Session one (10:00-12:30 UTC), Session two (16:00-18:30 UTC).

◉
Node
Image Data: data management, cloud-based sharing, and image data repositories
General Aim
Core Facility Staff Career
Duration
Full time
Deadline
11/01/2021 12:00 am
Start Date
27/01/2021 12:00 am
End Date
29/01/2021 12:00 am

Image Data: data management, cloud-based sharing, and image data repositories

This online course will focus on several key areas including data management of image data using OMERO open source data management solution, cloud-based sharing of image data using next-generation image file format, and image data repositories including Image Data Resource (IDR) and EMPIAR (Electron Microscopy Public Image Archive) as well as new developments within BioImage Archive.

◉
Node
Bordeaux
General Aim
Biological
Duration
Full time
Deadline
30/09/2020 11:59 pm
Start Date
01/12/2020 12:00 am
End Date
04/12/2020 6:00 pm

Cancelled: Light-Sheet Fluorescence Microscopy Workshop

The workshop will last 3 ½ days and is built on the basis of an alternation between theoretical and practical sessions. Both will be in English and provided by national expert trainers.
On day 2 a mini-symposium will be organized to present the last developments in different LSFM domains (instrumentation, sample preparation and data analysis) done by international experts. This mini-symposium will be open to a larger audience in order to promote LSFM approaches to the local research community.
The workshop will encompass various theoretical aspects of LSFM from sample preparation, to image acquisition and first post-processing steps (3D reconstruction, visualization).
The workshop will span various scales that can be imaged with LSFM based on at least 4 different LSFM set-ups.

◉ 38 Rue Albert Marquet, 33000 Bordeaux, France
Node
Bordeaux
General Aim
Biological
Duration
Full time
Deadline
14/10/2020 12:00 am
Start Date
24/11/2020 12:00 am
End Date
26/11/2020 12:00 am

Image processing and analysis on ImageJ

S'initier à ImageJ
-Qu'est-ce qu'Image J ? Où le trouver ? Comment l'installer ?
-Qu'est-ce qu'une image ? Comment ouvrir les formats d'images propriétaires ?
-Qu'est-ce que l'histogramme d'une image ? Comment le manipuler ?
-Le cas des images couleur : notion de table de couleurs, les différents types d'images couleur (overlay,
composite...). -Calibration en distance d'une image
-Montage de planches. -Travailler avec des images 3D : projections et visualisation 3D.
Quantification d'images
-Manipulation de régions d’intérêt et mesures simples en 2D.
-Amélioration d'image en préalable à la quantification : les filtres (linéaires, de rang, fréquentiels).
-Travailler sur une image binaire : notions de morpho-mathématiques.
-Analyse en composante connexe, dénombrement et quantifications d'objets en 2D et 3D.
-Calibration d’images en intensité. -Segmentation d’images (N&B et couleur).
-Quantifications avancées (co-localisation, pistage). -Introduction à l’automatisation de tâches.

◉ Bordeaux Imaging Center, Bordeaux, France
Node
COMULIS Training School: Image processing for correlated and multimodal imaging techniques
General Aim
Biological, Core Facility Staff Career
Duration
Full time
Deadline
05/10/2020 12:00 am
Start Date
19/11/2020 12:00 am
End Date
19/11/2020 12:00 am

COMULIS Training School: Image processing for correlated and multimodal imaging techniques

Within the context of the COST action COMULIS (Correlated Multimodal Imaging in Life Sciences, CA17121) we are organising a training event on ‘Image processing for correlated and multimodal imaging techniques’.

COMULIS (Correlated Multimodal Imaging in Life Sciences) is an EU-funded COST Action that aims at fuelling urgently needed collaborations in the field of correlated multimodal imaging (CMI), promoting and disseminating its benefits through showcase pipelines, and paving the way for its technological advancement and implementation as a versatile tool in biological and preclinical research.

◉
Node
Île de France Sud
General Aim
Biological
Duration
Full time
Deadline
Start Date
12/10/2020 12:00 am
End Date
16/10/2020 12:00 am

Atelier de microscopie confocale

Cours (40 % du temps)
- Rappels de microscopie conventionnelle, vidéomicroscopie
- Introduction à la microscopie confocale (physique de l'instrument, acquisition, numérisation, échantillonnage, multiples marquages)
- Microscope confocal rapide à disque de Nipkow (Spinning-Disk)
- Comprendre et utiliser les fluorochromes en microscopie confocale, protéines et sondes fluorescentes
- Préparation des échantillons biologiques vivants et fixés
- Traitement et utilisation d'images 2D et 3D appliqués à la microscopie
- Applications particulières en microscopie confocale, FLIM, FRET, etc.
- Résolution augmentée et super-résolution (PALM, STORM, STED, SIM)
- Séminaires d'application
Travaux pratiques (60 % du temps)
Un cycle de dix travaux pratiques sur vingt heures permettra de renforcer le lien entre théorie et applications, de reconnaître les éléments mis en œuvre, d'acquérir des images, de les traiter et de les analyser avec ImageJ notamment.
Une journée sera également dédiée à la découverte de techniques avancées telles que l'excitation biphotonique, la microscopie en feuillet de lumière, les F-techniques (FRAP, photoactivation) et la déconvolution.

Une séance pratique d'acquisition d'images peut être programmée sur les échantillons apportés par les stagiaires à des fins pédagogiques. Pour connaitre les possibilités de stockage des échantillons, veuillez prendre contact avec le responsable de la formation. "Happy Hour", le mardi à 18h15

◉ I2BC, Gif-sur-Yvette, France
Node
BioImage Informatics
General Aim
Biological, Core Facility Staff Career
Duration
Full time
Deadline
13/07/2020 12:00 am
Start Date
03/10/2020 9:00 am
End Date
09/10/2020 12:00 am

Postponed to 2021: EMBO Practical Course on Advanced Methods in Bioimage Analysis

Bioimage analysis has become a keystone of biological research: the deluge of data produced by increasingly advanced microscopes calls for experts able to guide life scientists in the methods and software to be used to produce quantitative knowledge from this data. Due to the complexity of the data, without such expert guidance, it is very likely that image analysis algorithms may be applied incorrectly, possibly even producing erroneous results. Moreover, the diversity of imaging modalities, analysis algorithms and software solutions is growing so rapidly that even experts are overwhelmed.
This advanced course concentrates on teaching cutting-edge concepts and tools for quantitative image analysis, and will seek to upgrade the competencies of future bioimage analysis experts on both theoretical algorithm advancements as well as on practical implementation skills.

◉ Meyerhofstraße 1, 69117 Heidelberg, Germany
Node
ZIDAS 2020: switZerland’s Image and Data Analysis School
General Aim
Duration
Full time
Deadline
09/03/2020 12:00 am
Start Date
29/06/2020 9:00 am
End Date
03/07/2020 12:00 am

ZIDAS 2020: switZerland’s Image and Data Analysis School

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.
Covered topics will encompass :
- Basics in Image Formation
- ImageJ, from everyday use to advanced applications
- State-of-the-art analysis procedures like e.g. co-localisation
- Machine Learning including Deep Learning
- Stitching and registration
- Data analysis using KNIME

◉ EPFL, 1015 Lausanne, Switzerland
Node
Bordeaux
General Aim
Biological
Duration
Full time
Deadline
14/04/2020 12:00 am
Start Date
26/05/2020 9:00 am
End Date
29/05/2020 6:00 pm

Super resolution in photonic microsocopy

This training session will cover the basics of super resolution in photonic microscopy, principally: STED microscopy (STimulated Emission Depletion) and single molecule localization microscopy. We will also present alternative solutions for super resolution like SRRF (Super resolution Radial Fluctuations), Airy Scan, or Computer based pixel-reassignment like ISM (Image Scanning Microscopy), and solution based on light sheet illumination. The mornings will be dedicated to theoretical lectures and application seminars. The afternoons will allow the participants to see demonstrations of these different techniques in front of home-made or commercial systems. The fourth day will be a full hands-on day, as participants will be invited to bring their own samples and test them on the different systems available, like STED microscope, STORM, lattice light sheet, ISM, SRRF….

◉ Centre Broca Nouvelle Aquitaine, 146 rue Léo Saignat, 33076 Bordeaux, France
Node
Bordeaux
General Aim
Biological
Duration
Full time
Deadline
16/12/2019 12:00 am
Start Date
23/03/2020 12:00 am
End Date
10/04/2020 12:00 am

Advanced imaging techniques for cellular and systems neuroscience

Rapid advances in live imaging of targeted cellular morphologies and functions underpin the emerging revolution in our understanding of synapses, circuits, and behaviour. In keeping with its long-established tradition, this Cajal course will assemble at its international faculty leading experts in developing and exploiting cutting-edge imaging techniques that have been propelling such advances. How to combine genetically encoded fluorescence labelling with behavioural designs, micro-circuit monitoring, or single-molecule tracking, how to avoid pitfalls of having false-positive observations and inherent noise, how to best analyse your multi-dimensional data will be, among others, the recurrent subjects of the Course.

◉ 146 Rue Léo Saignat, 33076 Bordeaux, France
Node
Paris-Centre
General Aim
Biological
Duration
Full time
Deadline
30/11/2019 12:00 am
Start Date
02/03/2020 12:00 am
End Date
13/03/2020 12:00 am

Pasteur course: Principles and Applications of Fluorescence Microscopy – March 2020

The use of fluorescence microscopy (wide field, confocal, multiphoton, and now superresolution) in combination with genetically encoded fluorescence probes comprise a powerful set of scientific tools to study live cells. However, surprising little practical and theoretical training in such methods exists within standard curricula, particular at the early stage of training (Masters or Doctorate level). This course offers to cover basic optics principles necessary to understand the origin of microscope resolution and design. Participants will get hands-on experience implementing simple optical configurations to illustrate these fundamental principles. Subsequently, participants will perform experiments on state-of-the-art imaging equipment provided by microscope vendors.

◉ 25-28 Rue du Dr Roux, 75015 Paris, France
Node
Bordeaux
General Aim
Biological, Core Facility Staff Career
Duration
Full time
Deadline
12/12/2019 12:00 am
Start Date
29/02/2020 9:00 am
End Date
03/03/2020 6:00 pm

7th NEUBIAS Training School for Early Career Investigators (TS14), Bordeaux 2020

This training school will cover the basics of image analysis using ImageJ/Fiji, as well as image analysis workflow automation using ImageJ macro programming. In addition, it will be taught how to use the software package ilastik for machine learning based image segmentation and object classification, and how to integrate ilastik into ImageJ macro based workflows. Moreover, an overview of further relevant bioimage analysis software packages will be given and there will be ample time for "Work on Your Own Data" sessions assisted by experienced Analysts.

◉ 38 Rue Albert Marquet, 33000 Bordeaux, France
Node
Bordeaux
General Aim
Biological, Core Facility Staff Career
Duration
Full time
Deadline
12/12/2019 12:00 am
Start Date
29/02/2020 9:00 am
End Date
03/03/2020 6:00 pm

4th NEUBIAS Training School for Bioimage Analysts (TS15), Bordeaux 2020

This school targets bioimage analysts, who are willing to enhance their professional scope and techniques for improving the quality of their analysis, as well as willing to contribute with their knowledge and experience to the school. Prerequisite is a proficiency in at least one programming language (we do not train coding). The school focuses on workflow designing. This year, we will have a particular emphasis on statistics for bioimage analysis and related tools e.g. R and Python libraries. In addition, we will overview machine & deep learning components.

◉ 38 Rue Albert Marquet, 33000 Bordeaux, France
Node
Paris-Centre
General Aim
Core Facility Staff Career
Duration
Full time
Deadline
Start Date
20/11/2019 8:30 am
End Date
22/09/2019 5:00 pm

Building a Successful Career in a Life Science Core Facility

◉ Institut Pasteur, Rue du Docteur Roux, Paris, France
Node
Bordeaux
General Aim
Biological
Duration
Full time
Deadline
06/09/2019 12:00 am
Start Date
15/10/2019 8:00 am
End Date
17/10/2019 6:00 pm

Microscopie à épi-fluorescence et microscopie confocale: Des bases à la pratique

Microscopie à épi-fluorescence et microscopie confocale: Des bases à la pratique

◉ Bordeaux Imaging Center, Bordeaux, France
Node
Montpellier
General Aim
Biological
Duration
Full time
Deadline
06/09/2019 7:00 pm
Start Date
30/09/2019 9:00 am
End Date
02/10/2019 6:00 pm

Programmation de macros avec image J

◉ 1919 Route de Mende, 34090 Montpellier, France

France BioImaging RIFollow

France BioImaging RI
Fr_BioImagingFrance BioImaging RI@Fr_BioImaging·
9 Apr

📌Today!

Euro-BioImaging ERIC@EuroBioImaging

Don't miss this Friday's Virtual Pub! Linda Streich, Cell Biology and Biophysics Unit, @EMBL, will talk about “High resolution deep brain imaging using adaptive optics three-photon #microscopy.”

Everyone is welcome!

📆 Friday, April 9 @ 13:00 CEST

https://www.eurobioimaging.eu/news/the-virtual-pub-high-resolution-deep-brain-imaging-using-adaptive-optics-three-photon-microscopy/

Reply on Twitter 1380418119806685188Retweet on Twitter 13804181198066851882Like on Twitter 13804181198066851885Twitter 1380418119806685188
Retweet on TwitterFrance BioImaging RI Retweeted
EuroBioImagingEuro-BioImaging ERIC@EuroBioImaging·
9 Apr

You still have a chance to submit your abstract for #elmi2021 - Deadline is next week (13th April).

This is going to be a great meeting, even if it is a different format than normal, and we really look forward to seeing the microscopy community there! https://twitter.com/YorkBioimaging/status/1380193176649089028

Peter O'Toole@YorkBioimaging

elmi 2021 abstract deadline is next week, so get submitting now. Never a better time and community to talk about your science. https://www.elmi2021.org/
Registration is also now open. Hopefully see you all there.

@BioImagingUK @EuroBioImaging @RoyalMicroSoc @RMS_EarlyCareer

Reply on Twitter 1380403137706622976Retweet on Twitter 13804031377066229763Like on Twitter 13804031377066229763Twitter 1380403137706622976
Retweet on TwitterFrance BioImaging RI Retweeted
GlobalBioImageGlobal BioImaging@GlobalBioImage·
7 Apr

We are hosting a 2-hour webinar on the topic of Communication.

Learn how to organize messages into a story in any medium 🧾 💬

Researchers and core facility staff 🔬 are all invited to join.

12 April, 18:00 - 20:00 CEST

Register here:
https://us02web.zoom.us/webinar/register/WN_1zh6w0XGSvusLcGApwmEZQ

Reply on Twitter 1379761935336497152Retweet on Twitter 13797619353364971525Like on Twitter 137976193533649715210Twitter 1379761935336497152
Subscribe to our newsletter
Privacy Policy | Contact Us
Credits | Designed by Yhello
Close
Designed by Yhello
contact
Yhello is a digital creation agency based in Paris, created by former scientists passionate about the web.